| Basic Information | |
|---|---|
| Taxon OID | 3300034082 Open in IMG/M |
| Scaffold ID | Ga0335020_0000502 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29635 |
| Total Scaffold Genes | 44 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (15.91%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002018 | Metagenome / Metatranscriptome | 603 | Y |
| F030696 | Metagenome | 184 | Y |
| F040591 | Metagenome / Metatranscriptome | 161 | Y |
| F088520 | Metagenome | 109 | N |
| F097333 | Metagenome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335020_0000502_15742_16059 | F088520 | N/A | MKNMANKFWFAEQSSNASANTIIVDVYNRYDDEHIGTIELIYNYDKNNNNETWTIESAEWQQNLTLEQCDEAMQELTDNATENFHEFCYECYNYDPRDDEDWWFV |
| Ga0335020_0000502_17652_18074 | F030696 | N/A | MRNLVTILSLIVTIFATSCSSNYHLRKAIKKGYKCEEVGDTIRITTVDSFPIIRDNEIVYERFYTTKDTIIQYKTSYVPRTRYQERIIYRLKRDTIRQVQKVEVAKYKSQKEKPVFWVLILGFVMGMGTMYLFRYSKTQL |
| Ga0335020_0000502_25727_26176 | F002018 | N/A | VISYQALINEIIGFYDAHLQVKKVGSDFKEQLFNFATKDEKYPIVYIVPVDAIPTDNTNDFTLEIYCFDIIQKDRANINVILSDCHQILMDLYLNYTFSLDDRDFDVVGFPSLIPLNNDLLDYAAGWLMNITFTMDSWTDCQIPKQIVD |
| Ga0335020_0000502_5066_5437 | F097333 | N/A | MAIYNQSWLHTILHDLNGSVVNESLWQSICFHYGITATVNGSWLQALCEFFDVNHDLGEGWIQSLAEDFGATAPVNGSWIQALAMEIQANADLIDLLIARINAEGGVLEAEPCLELTLNQFDI |
| Ga0335020_0000502_7452_7760 | F040591 | N/A | MKIKTEFQGKTIIKRTSLGNKTIIVDNIDVSKYRYYVTIGLGYLFEKEAETATVPEPIRYEGIEADEQVEAPAVEPKPKRKRPVNAVAKKESKRNRNNDTAI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |