NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0019280

Scaffold Ga0310130_0019280


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0019280 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2196
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002489Metagenome / Metatranscriptome554Y
F021111Metagenome / Metatranscriptome220Y
F076926Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0019280_236_352F021111AGAAGMTESKEPLKQIQTDGGIIIETDQMGREKFWEDLGRPND
Ga0310130_0019280_345_557F002489AGGAMTEKEKSQNLEDNLDMVNYIMLHRIYDILTLIANKLVGPEDTSKLIEYHDQGFLLGPTPSYTPNETDENN
Ga0310130_0019280_64_276F076926GGAGLKIQIVSKYLALAEEGLVPGISCPVDQGPLLPNLDLNDTIYLYCLSCNYKNSMGLEVYDRIERTVKANTN
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