NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0009279

Scaffold Ga0310130_0009279


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0009279 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3522
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003377Metagenome / Metatranscriptome490Y
F039989Metagenome162Y
F059762Metagenome / Metatranscriptome133N
F062553Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0009279_169_405F039989GGAGGVRFLLAFSVVLVGCVATLPGDNGVTADLACETARMVVQLRQEIAPSPASDKCDNCVDGFIGDGKIKIVCPICKGTGKK
Ga0310130_0009279_2089_2445F059762GGAGMSDSKIRRKSKAHPFTLSTATSVANTIPMFDMAGGIVEMGTVNTNATQLNLWVSDVEAGPFYQLYDKDGAVVKITLSASTTDGRAYAMPDEVFAAQFIKFVSATTNSTGTVGTVMFKG
Ga0310130_0009279_402_752F062553GGAMTLSDLQAHVWDRLPTLQRTVAGRRIVSRIVTSAVRGWPIPVLEQCDAGETQIVAKHYTKQVERIARREYGMGIILTLVLGALVQEVVKLLVQWWLDRQENRTQMRLLAREARHHD
Ga0310130_0009279_745_984F003377GAGGMTDQAKDTMLSVLRDYGFSVVVALACGWVLRQDVLLPLVEEHRQFVKQLSETQREISQAVAEQTKLLYALQPKAAKVEN
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