| Basic Information | |
|---|---|
| Taxon OID | 3300034073 Open in IMG/M |
| Scaffold ID | Ga0310130_0008385 Open in IMG/M |
| Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3765 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009202 | Metagenome / Metatranscriptome | 321 | N |
| F009600 | Metagenome | 315 | Y |
| F010908 | Metagenome / Metatranscriptome | 297 | Y |
| F011218 | Metagenome / Metatranscriptome | 293 | N |
| F015723 | Metagenome / Metatranscriptome | 252 | Y |
| F039112 | Metagenome | 164 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310130_0008385_1127_1564 | F015723 | N/A | MAKIVSITPKGQWQEFYKLDIRFDNGDFGTAFAKSPTPSYNVGDEVDYTKNEKGTIKINKPFTGGGFSGGNGGSFANTSKVSGDERSASIIRQVALKAAVEYACAAGHDVNTILANAATFNEWMNGNQSTATHQEHFATRNESPF |
| Ga0310130_0008385_2584_2895 | F009202 | N/A | MYPSEELHDLYIREKQLMLSGTAIWLAHQAADKSKGREVQDEMLDHVMNCHHADQLLQQFIDYRLFANRKLNEVMLANAQLRINNEEMVMEIERLQRIIEDNL |
| Ga0310130_0008385_2892_3122 | F010908 | GAGG | MKQIFSPFQQLECFRVDGVDYICLDYQIIQDSEDNLVEWCSWFKFKRLSDHKHYLLPITKIIETKNEGRATLCKCK |
| Ga0310130_0008385_379_579 | F011218 | N/A | MQYYTNPAKRRKIDFLLAECASLFANCDSTYPARQEAKYKEQSILAEIAKIDYHFAIQCGYLLQDN |
| Ga0310130_0008385_552_938 | F009600 | N/A | MRVPSTGQLKSYHVVVGKVPSLNAFYASKHWTVRAKAKDKHCAEVLQQLQEYDCVPIHHVYITCKVNYRYDIDNSIMAVKFALDAFRKWGGVKDDSRAYVRKLKMEHDPEIHPDTAEITFQGLVVEQS |
| Ga0310130_0008385_972_1112 | F039112 | N/A | MTLSLSQETYTQALQVQQAHIQALQNRVQELEAKIQVLEQQSVLFI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |