NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0006204

Scaffold Ga0310130_0006204


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0006204 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4570
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F024039Metagenome / Metatranscriptome207Y
F038675Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0006204_1972_2508F000369AGGAMDIELADHFDRMNKVVEELLKGNNPTQIAAVTGFKRAEVLEYIDEWKQVVRSDSGARDRAKEAISGADQHYAMLIKEAWRTVEDADQAGQLNIKATALKLIADIEGKRIGMLQEVGLLDNAELATQLAETERKQDVLVKILKEVTATCPKCKMEVAKRLSQITGIVEPVEIIEEVSGS
Ga0310130_0006204_3_173F024039N/AENPGHADSWYKAKMREIRKQRTVDYFNKKYNLELDDFDVADAFGIAHYSNTVLTER
Ga0310130_0006204_922_1065F038675AGGAGMKLYQSQTWLYRRYVVQKKTVTEIAAECKVSAMTIQRHLEKFGLIKK
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