NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0004328

Scaffold Ga0310130_0004328


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0004328 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5808
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000346Metagenome / Metatranscriptome1253Y
F033775Metagenome / Metatranscriptome176Y
F105028Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0004328_1963_2145F000346AGGAGMMDKADLKQDKKMIAGAVHKHEKKMHPGKPMTKLKKGGPTGEMMRKMGRNMARARNQGMR
Ga0310130_0004328_4646_4924F033775GGAGGMAMQTDVQAISLAASGDISAYPTRVRGLVVEPGGSAGSVIIKDGGSSGTTLFTINTIAGGETFNVFIPSQGVRCETSAYATLSNAKVTVFYG
Ga0310130_0004328_4940_5359F105028GGAMVAQFYFDPTAADTTAVQVSSANTAPVILPAGAVVVQVNINAAGTGGTTPTFDMGWIGYSDTSASDPNGLIAAGDADAGKQVFDWSTATAGDDMGVVMSATQMVKITAGATTGDAPTGGTASGQILYYVTDPFLGQQNV
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