NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0003151

Scaffold Ga0310130_0003151


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0003151 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7194
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045757Metagenome / Metatranscriptome152N
F068842Metagenome124N
F082697Metagenome / Metatranscriptome113N
F093860Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0003151_1338_1886F093860N/AMSKHVVFQPADLDNSGDENLKDTILWAAQFHIHPKIQPELPKEMMALVKGESTVRYPLAYWKKEFENLGFQLDMDFPYCKEFVWDYVVEDAVRITIKAADINTNFNQIIVPKNLAKQILDEMSLPLFGKMHPEKFHTKLIGYIDLSQSNFALEDKIFDVLTELEDLCAECITYESYVEWKVS
Ga0310130_0003151_2800_3111F045757GAGMFAVLTLFLLSSSSYAQEEKKKDPVYTVISTKYVLTSTIIDDFFRAAKITTYSYNKEEINKVKIPKFQIWEKNFDDTKFLLEKFLSVQFETDEKKSYYMVKKK
Ga0310130_0003151_3160_3447F082697N/AMHYEDLDDDQLLELQKQFEENRKIVLSMDPEDFLERLVKMHDSTDVILEGYDLVTNINEGHGIAIAGIIRLRNALMDSIEWITQNLLESDEEEEL
Ga0310130_0003151_868_1314F068842N/AMWYRISQQQPFDNLAATSSPSMVYQGASQGIKTDAAGKAAVQKFMNDGVPVAIRDVQNNKMITLAHGNMTNGQFQIVDQNGQGITQDNYNQWANQNGLNPNNLLLSCYQGAANTGAFKNLTSYRGKLMVSTSVNPDENGNFTVFVSGG
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