NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0001080

Scaffold Ga0310130_0001080


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0001080 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15969
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F002827Metagenome / Metatranscriptome527Y
F005146Metagenome / Metatranscriptome410Y
F010680Metagenome / Metatranscriptome300Y
F103175Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0001080_11157_11639F010680AGGAGGLAIVIQLSQAEVRVCALIAVERWLTKFGSVDRPNYASGKKFGKLEPEINANIRANVAEWAVARHYNLGWNMPWYPNELHKARKNISDVGDLEVRTIRTQSAIPFWAKDAGRTIVGAKVLDDEYYSMVEIYGKFQADDFMIDEFADPSIDGWRVPVSEMEL
Ga0310130_0001080_12510_12737F005146AGGMKLINFYEVMDRKGDVAWGGASVTDAIAWFRRGLDNSIFVSVWDEQDPEDPKLVTDKIEITALVLATITSERARV
Ga0310130_0001080_12984_13157F002827AGGAGGMNKEYYQAKADLCRDLFIKQVGDGETKEAGANLLRMVNALNELNLIKYKEEKENVSN
Ga0310130_0001080_3892_4077F000368AGGMETLKQVSLTWFRAAASAAIALYLAGETDVKTLGAAALAGFLGPVLKWLDPSATEFGRGA
Ga0310130_0001080_8398_8574F103175AGCAGGMICKECKTAGDFNTVGKYHFAGAMHQKCEGDCGCHHKTGPGWFAKAGEKVKPIQTQSP
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