NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0000985

Scaffold Ga0310130_0000985


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0000985 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17080
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (73.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041150Metagenome / Metatranscriptome160Y
F056376Metagenome / Metatranscriptome137Y
F093303Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0000985_15720_15890F093303GGAGMINLTQEQKFVIFWLYNRVAENIPNNPIKSGENNIIVNGIDVTETVKQLLQDRLFV
Ga0310130_0000985_5568_5792F056376N/AMIKCFSNVVGHKEAQELVIDLNQMKSSKSEVFYIQYDRNQDYSKDDNYLVVGNVTQSDWDELNLDMDFMEVDLI
Ga0310130_0000985_9711_10193F041150GGAGMGMGSFAVGSFVIEYDDLKKICPDEIKAIEKAKYFDGVGWGNIGRWLAWSDNDQIIDALHDAVLDDESKATIRLELTEEQIVEDIFDQYEILVTNLKTVFNKNTGLSLHFDHYDEEGGDRYDNPGDKDGCIFCVDGMVQLTPAGEKYKDIISERKWTQYG
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