NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0001242

Scaffold Ga0335019_0001242


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0001242 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16407
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032541Metagenome / Metatranscriptome179Y
F061656Metagenome / Metatranscriptome131Y
F061834Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0001242_15439_15789F032541N/AMNLLNEIKQILSEVTKVNFKGHKFVLKIDVNEDPNKKGVKVQFLPTTFTGMSKKEQDDIAMELGAKLNQGLSSLGLAVERDRELKDKTIIGFFIYIEYLNKIIINALNQAAQSSND
Ga0335019_0001242_15801_16013F061656N/AMPQFCFYSKNNPTQEPVGVLHAASREEAIKFFSLSKQLPVNDFLTIFEVKNYTYGAQEGIAENTKQLLKG
Ga0335019_0001242_16036_16371F061834AGGAMARDVIEKKLFIENIILLREIEDRRDFMEEELGLDMSIYEEKFLQIIENLFKIHFSKEQFALIQYYIYQVPTLMDWDGKIDLSDGKDMITVDFETPEQVWNVITSIKEVKK
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