NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335019_0000727

Scaffold Ga0335019_0000727


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0000727 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21033
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036233Metagenome / Metatranscriptome170Y
F044493Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0000727_1435_1818F036233N/AMNLATVRNELESAIILGGISKVYKFVPEKPVPLCAIMEPDSEFITVYENQYDADYASNWRVLILVPFATNETETENLDDTLDTLIPAIWEYTTANRLTVDKPFIQEVNGARYLATNINISIDIEGGN
Ga0335019_0000727_18581_18964F036233GAGMNLAGVREELESAIILGGISKVYKYVPERPNPLCAIMEPDTDFITVYENQYDADYASNWKVLVLVPYATNETETENLDDTLDTLVPAIWEYTTATTLTVDKPFIQEVNGSRFLATNINISIDITGGN
Ga0335019_0000727_19752_20006F044493AGGAGGMEQQDLMSTLKWKELAEVEAYLETPMDEWNVIASKAKLAFAMQYMVAKRNNPSLTIGEAEEMTITQLSELSGMDMSDPKEVTSA
Ga0335019_0000727_2607_2876F044493N/AMEAVKMDNFDLMNTLKWKELAEIEEYLELPMDEWANSKSKSKLAFAMQYMMAKRNNPALTMGEAEEMSIQQLTELAGVELTVPKEVSPA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.