NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0008580

Scaffold Ga0334995_0008580


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0008580 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9778
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012014Metagenome / Metatranscriptome284Y
F021096Metagenome / Metatranscriptome220N
F062696Metagenome130N
F082169Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0008580_1026_1499F082169N/AMKFNLKTILAWGGAFVAYRLYKLYELGENVIYKPVGVSFTRGKSINDFVVRVKMELLNPTKTTLQMRGIDGKLKIKDQVIGTFASAPFTIKAGISYFFLDFKVVPDTTGVQIITSILKKQVPVFVVEMNKRLPYFSITEVFAINPNTIETSNNVMVK
Ga0334995_0008580_3000_3395F012014N/AMNLLSKEVLIGAAALGAGAVAAKVVQKKLIPMVLPTATPIVSNLVTLVIGVLTPTIVKGSVGTGLGAGMIATSVAGLVDPYLVKAGITGYDDTYMGDVLMGETGGDVLMGATDFAAPSNDFTGEGAGEMDY
Ga0334995_0008580_4650_5132F021096GGAGVAAVVSPIINYFLQNNLCKDYTAIEGEMSTLVTLSFPNTGDYQRSYYFASNNMLDGQNCTITAIEIVPSTELSRLPNGEFNVDASILPNGVLYVSNLKRSIIATLPLYGLQRTANNGKATFTYFNNQVWQNCYVEFTQSGFTTPITPLTFRVYYVPKIKN
Ga0334995_0008580_9152_9574F062696GAGMNYGTFRLYCLCLVGVCLSACSPQSTLSRLLKNHPYLYENFRNDSIRIENVLVQDSVFFFTKEKDTITFSNATIYREFDTLRLVQSCPPCTTYVSKTILQPTQKLLKETRYKRSLREKLEDSIFPLIIGLLLGLIITRRG
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