NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0167656

Scaffold Ga0334987_0167656


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0167656 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1585
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F001897Metagenome / Metatranscriptome620Y
F032155Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0167656_1352_1561F000403N/AMGATGMSDFMEIINPQRMIGRLYFKGEVVEEYKIEQCDKCSKLTKFDAFGYQIGYDKTEKIIWFCGDCR
Ga0334987_0167656_283_483F032155N/AMSLGEWTAVGGLVITTLAAVYSSMKIIIKAVMSELSPNSGTSLKDQVSRIEARLDYLYTQLIEEKK
Ga0334987_0167656_744_1370F001897AGGCGGMGFLDNYEGNKERTDRWIKTYPEGRLEATIVNFDAEKGSILVRAAAWRNQTEIEPAGIDFAYGYQAAYNANMKRWFVEDTVTSALMRVMALVMGGTDKATKEVMQLVKTETPAADYDYWTTKHGDVPSYQTAGEAELSGTPSFGSSELAQWSANDVPSCSHGNRVWKQSHDGSPKSWGGYFCTERTKATQCQPVWYVLRSTGKWEPQV
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