NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0015663

Scaffold Ga0334987_0015663


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0015663 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6930
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011226Metagenome / Metatranscriptome293Y
F043829Metagenome155Y
F091307Metagenome107N
F093533Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0015663_24_320F011226N/AMAKQISPVNVWVNGESKQAEYFQVTCINDNYENSATNYWQLFTKVVDAEGVESMGEQVSQGNLTIQGEEYVLWGDQPAMAINAWIYNWSAEKLNLTII
Ga0334987_0015663_3735_3923F043829N/AMSEMSLPKWGDLNTFERHKLLGELIDAMIYSGEAVQHLKVTVEQFRLMGYVKSIILPQNEEQ
Ga0334987_0015663_4295_4576F091307N/AMKKQVTTNVRIPAEWLTISINDIMIMVTATINDAGDYIDVNVREILMPGYHCLNIMPQFHSAFYELVEQKCMDAYTFKMDSEYDHEYYADYAF
Ga0334987_0015663_4566_4901F093533N/AMPSERIEMTLEVKGEVRATAFPQRTYEGIENQRKQWYYFYGLKSIKEWEIYISHISPMKENTPFKIERPFPYYIKSQQNDTTESESKPANLYCEPVDTSGGFVQTVGKRQG
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