| Basic Information | |
|---|---|
| Taxon OID | 3300034061 Open in IMG/M |
| Scaffold ID | Ga0334987_0009334 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9207 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (31.82%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000922 | Metagenome | 833 | Y |
| F001964 | Metagenome | 610 | Y |
| F005388 | Metagenome / Metatranscriptome | 402 | N |
| F028148 | Metagenome | 192 | Y |
| F085601 | Metagenome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334987_0009334_1009_1254 | F001964 | GGAGG | MSRNLFAKPVYKVQLSGAIGWSDMKEKVVSYQTVEFASRKDAERAARELNPGEYTQGRIRVVPVELGEDYDIYPTLERPKP |
| Ga0334987_0009334_2931_3533 | F028148 | N/A | MKTIHQVIHEIQFFDPAVRAFDAHDLPQAVRAYLHNKYSMDARLTDEEQQLVETSFEHFADNLREAFQDDPRPDATRFYLFDDLSLYVKTNAGPELWADAQVFVVERILPNMRLTRLEADLMREIGMDDQVNEVRDDFYSAFAHVLHRDCGIPHCDAREHWNAFSRQLSDSACESIVLGGGESGRAEGLRFASEYTVSNA |
| Ga0334987_0009334_3852_4055 | F085601 | N/A | MNYYVMKTSLASGSKPLLEHWSKTESDAVAYARQQLDLWREVGVPNPPRYEVHYSGLRGSALWSSLD |
| Ga0334987_0009334_5850_6296 | F000922 | N/A | MKLTDDQWKTARGLYLTGSDWGTIADKLGAKKATLQKRAEREGLTKLRREAKSISVSEISVKTEKSLEALSALVRSKLAADAASTLERIDSYALDGIKDESVRESILGSVAKRSALVFGWSEQGEATSVSINLLGSMPDRFAEVVVSK |
| Ga0334987_0009334_7211_8449 | F005388 | N/A | MACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFNTTSIEPTSAEEWSAITLASGSNGGACDVTYSEVPVGFNSVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDLRFADQGSGAGAELLKRIGANRVIKNYRHVPNLFPPRFTYAGGKYTLVQPFTSASGTKGTVFSVNSSWTTAPYEAAFIVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHAAEPIFANQGMTIIFRRCTGALTQVICS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |