NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0007273

Scaffold Ga0334987_0007273


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0007273 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10487
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000220Metagenome / Metatranscriptome1544Y
F000649Metagenome / Metatranscriptome960Y
F098744Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0007273_3562_3735F098744GAGGVFSLLKWFDVGDDWRLGIDRFIKCCAAVLAINWLLDLLYILPANESKKIIDFLISKK
Ga0334987_0007273_3732_4340F000220N/AMSKEQLSIIDKVLEYVSSPFRLFAMVLMAVLTFAGYFVYTNQDLLIGAYKESKKIPTIAEDRVEDAAAHLFKQSGALIVAVFKVNSMFGTRILYRAYGKNGRDKTNDGLDVGLFTQNAANNADVVKLMASEIPCGEYKSAQSEMGLWYIARGVAYTCRISVPPEPGRFVGQITVGWASEPEDMDSTRAMLQIAATMLSRSKQ
Ga0334987_0007273_7740_7886F000649N/AMSKAATHYLPDGKVYKGPVHKEGGVLMTGVKHTAKSRNLTHAPPKKAK
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