NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0006506

Scaffold Ga0334987_0006506


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0006506 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11083
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (54.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005846Metagenome388Y
F010463Metagenome303N
F025739Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0006506_10457_10840F010463N/AMVLAATIHRVKLCEDKLREFEQIVSTLTSTMAQNRAELASQGLEKLVMGVTTPLDIPKELIPTRGKDGARRNREYSTVKKRWTLWKHQLDSGMSMSELARAWGVHRTTIMNAKSRNFAVRKAKGGSR
Ga0334987_0006506_3977_4255F025739AGGAMKKLLTNAVCVIRKSILGFTAASLICGCATTRPYDIGEVPHQDSISDYIMRWDKLDRTKATPDEYRQLYGQTLKTISRLVEENERLRKRLDQ
Ga0334987_0006506_6810_7379F005846N/AMTSFPLPARPVGSAVPASHDEFSDGFSIEGKLNGWRGWFDQETQQGYNRHGKFATNHKLMADRILGAGIKSRFVDCEIMGQRTKTGNGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVQLAHHKINSIWEEMNYQNNKAGEVIWEGFVMKATDDGKYPYITNPNYCSPAWQKQRIRW
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