NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335023_0126471

Scaffold Ga0335023_0126471


Overview

Basic Information
Taxon OID3300034050 Open in IMG/M
Scaffold IDGa0335023_0126471 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1463
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001019Metagenome / Metatranscriptome804Y
F001460Metagenome / Metatranscriptome690Y
F007468Metagenome / Metatranscriptome350Y
F009685Metagenome / Metatranscriptome314Y

Sequences

Protein IDFamilyRBSSequence
Ga0335023_0126471_1128_1322F007468GGAGGMTTQTKSSKFIEYMKIHLISLNQDLEADYNVQSKINIQGQIMATEHLLSVATDIMNNSNERAYG
Ga0335023_0126471_1306_1461F001460N/ANRMINAIHDSKLFYLRTPSDLMDKAPLRKDLEDAVSFLQGLWAEGYFDYTN
Ga0335023_0126471_25_171F009685AGGAGGMKMSDQHIDAVLAEAQQLLWGGSETENIAAHNLISKLIQDRMSETNLS
Ga0335023_0126471_468_695F001019AGGMTYEPSLEILEVEYSCSPGGVDVFEVYDKSDIPLDMPIYETEDLTKAVLFCYNLGKDFTVRTLAEWNERELAYEA
Ga0335023_0126471_692_970F000263AGGMTPEDIGLPPHLQRLVNYDVNGLDIMHGELKNLMLMAEQDLANALEQEELSEEAMDSMVRTECEGRLDTLTELYNLTYQLSFAIAERQGQKV
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