NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335004_0091450

Scaffold Ga0335004_0091450


Overview

Basic Information
Taxon OID3300034021 Open in IMG/M
Scaffold IDGa0335004_0091450 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2052
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022161Metagenome / Metatranscriptome215Y
F047573Metagenome149N
F061679Metagenome131N
F081246Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0335004_0091450_1421_1624F061679N/AMLNDYESTRKTLNGAYLDMCQECYTGLDVLIPTIDRKDLLHEADMPSMDEIFDEYGDYTGYDDNEDL
Ga0335004_0091450_1909_2049F081246N/AMDFMALRLNDPDFRLMYGINEFDKWYSDYMEILSQKHAEPTEENKP
Ga0335004_0091450_288_509F047573GAGGMKDLIFIGVFALGCICGWVANQVHFEHNDCIDYSGKYQRYEAWLSVKDGIYRCFWIEKDYPHRVRIQGVIDVK
Ga0335004_0091450_53_298F022161AGGAGMSNEHGYCPNCKTDLDGGSIWQHFFETTGSEAEADKSAKSYGADRTQGQWGRAIGLYDMEVDRTVAWKCPDCGHQWGRNVT
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