NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0037048

Scaffold Ga0334991_0037048


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0037048 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2662
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002621Metagenome / Metatranscriptome542Y
F078423Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0037048_1723_2661F078423N/AMPDLPQIGAIDDGFVGVVSRIDPALIPASYVSNAVNRRFEDQVIKNRWGIVQPKWGGKWESLNRVVTVTSNSVLAVPVSGTPIPQNSSIASDPVANVLVYPNGTRCLLDDGTNCVMSTAAIAFTGPPVNRTVQFYNQTLPFEDILGVLPYRDPDTGANALLVAVNEARASDGGQGKVWCIRPNQSPVEVPMNGHDIYLPVRLIQATNGVVMLRPGNARYYFDSAGGIADSILLEDGFALLCENNNHLTDEDITQINLNVVPDLTTGDIVTIGGVGDVAPLWTATPGSGQGFQFFVNVVNEEVSLHLTLIDARA
Ga0334991_0037048_320_553F002621GAGMFNTAKHLMISRMIWLLVLPICLGCQVTRVVLVPSGDPVMLAQPVKASVYAFDADKKLVGPSKVVLPAGWYVLPKSQ
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