NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0002132

Scaffold Ga0334991_0002132


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0002132 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16389
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (51.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F040629Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0002132_6633_6872F000671GAGGMSEKIFCYSCNKTKNSLNLKKSSLLTINLFLCQTCIDNKFEPRWVVLIAGRQNGHEHVKDFIQKKRYVGAEISASELLV
Ga0334991_0002132_7374_7679F000473GAGMSNVYDNKHFKYGMNQWTGEPNKPVFYNLEMKNRLRELKKPMFLLMDVVQYPEFLALRLYEDNFIQFDGIEKEKVIDYVSRAKKLLESYGVRVELEGKPHG
Ga0334991_0002132_8895_9041F040629N/AMNKYLIKLEISVEVEAFDEEDAKEYVSDIFGVDDEVKSVKILTVKQKS
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