NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334986_0102842

Scaffold Ga0334986_0102842


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0102842 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1710
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029678Metagenome187Y
F033321Metagenome177Y
F066470Metagenome126Y
F075715Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0102842_3_245F066470GGAGGMTEIARRIESAKRSAVIYRNYRRARERALTRLSNAYPETYKELLEQEKIVDEQMGKKWLDIDGSTGQSMDLDASTSPTGGR
Ga0334986_0102842_559_711F029678AGGAMSRVTGFTIFNKVTGQKLATLPLSIPIGATVDAYEREGHQVSWGWEESND
Ga0334986_0102842_708_878F075715AGGAGMNKEYLAAKAELCSNLAQEQMVNGEGEEAVKNLKRMIRALEEINLINYLEERKTIR
Ga0334986_0102842_871_1014F033321GAGGMNRELEVLREEYKRAVDSPLFDDPKDYCVLLDLIQDRISLLEGENNE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.