NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0038477

Scaffold Ga0334986_0038477


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0038477 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3110
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001326Metagenome / Metatranscriptome721Y
F016523Metagenome / Metatranscriptome246Y
F036685Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0038477_1064_1219F016523AGGAGMYTIISPRLGTPGDEFIPDENVNVAALLDGGLISTDSAKKSSKVKSEPKEQ
Ga0334986_0038477_1721_2029F036685AGGAGMQVKLSIDLGDGKPARQMTTNMLAIVDWEKTENRRSADGKGIGFSDMCCWAYTLCKLAGDKVPATWREWVNENPNMTITPINELVDETPFIEGLGGEASAKS
Ga0334986_0038477_60_692F001326GGAGMATYSVTFKYLLDDYAVLQLLTPTEIAVGESITVTGVDATFNGTYTVRALPQYRYTGTDTEGDLLYDIDEPIANQVLYAKTASNVERIASPGTVNYTLTCTWVSAANLVTYLGVQITNPSDDYTLITQAVSAGNQFCYRRRQEAGYIDSLTTSPGGDQTLGTLMYCAALWRSRGSLENTFASFDGMGTAPQQSLTPIVKQLLGIDRPACA
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