NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334986_0030363

Scaffold Ga0334986_0030363


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0030363 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3576
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000847Metagenome / Metatranscriptome861N
F001129Metagenome / Metatranscriptome768Y
F004519Metagenome / Metatranscriptome434Y
F014844Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0030363_2217_2387F014844N/AMLIGYGYGYPISMLQGGVAAGVWALFNARATADGATAAEAAVNGCLFNRFAVIYNF
Ga0334986_0030363_2387_2638F001129N/AMLGQGGTMEFINGTVTGKNYDFLVVNAAATFTTLTGTGSENLITAYNLSGASISAGIVISGRNGGKITAVTPSAGSVIGYTFL
Ga0334986_0030363_2689_3192F000847N/AMSWIKIKQALLDLANAHPQVNSFGTGDPLAVGTDNTINLRTPSRERIVYPLVFADVQSASTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPNEDWTLSSSVSLTRFVESRDDRTAGWQATMTFEIPYSHSVCEIPT
Ga0334986_0030363_656_910F004519N/AMATFRKYIFPKQADADKVLALCTGTTAAVSLGVLDKFIAYDILWEGDAPEDATQYETWPEPCGVHAFAGWEEQYTEDYHQHKSL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.