NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0007349

Scaffold Ga0334986_0007349


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0007349 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8192
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F002333Metagenome569Y
F053230Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0007349_3885_4826F002333N/AMQLQTELNSAQALIYSRSNIRRAYADFDDTEISGIYLRDDNCVVVRCDGSEQAYERTLIKTAFQQYTHRLKDFFSYLGPNYRGPSVWHNNAYVMFKGWNYSHALGHLTSNAKLQQHWADKFIHLSDPSKVVALLQNDQTDLGHLVAPDGLRSPTRPIDLESELEENASGVQASTPEPYCSCGSFQRQLLNVSLFQQEIEGFKPWCIHLTWFHKYRELLCKRTEVRNALPSGTPDKCVAWWYAPPQDHISEGKFVLLHTKSGAQAPLTHWRTYKPKEVFNQGHAWDLFFNMMEAGYVPFPGTALPQLQSAVKKK
Ga0334986_0007349_5383_5502F053230N/AMFEAFASAVLPVLKDILWTAAAALLAFALNKLQSKFQNI
Ga0334986_0007349_5506_6207F001018N/AMTQITQVKLKDLNILKLYEHYGALERSLPLLTPESQELAQAELEACASLRSEKVDRIYYAMAAHEDALERIKKEGDLIAQAKRHHESQLRSLKGLLGWLRRSLPQESNKIQGRNYQFALSKKKDLTVEINSDPEFWNSEERQLYCIEQETTTTKQIVVRSMSGEVLAERTEPKTKHEVLPNLDAIRNAYQTGQQLPFGVKVTQEYAVRTSRIYSEPRVELDASEYPGDLLSKD
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