NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0003763

Scaffold Ga0334986_0003763


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0003763 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11922
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002370Metagenome / Metatranscriptome566Y
F009203Metagenome / Metatranscriptome321Y
F009260Metagenome / Metatranscriptome320Y
F093774Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0003763_11471_11638F002370AGGAGMMDAKKAVHKHEKAMHPGKPLTKMKAGGKTNADMLKYGRNMAKVMNQRSPGRKGA
Ga0334986_0003763_11640_11840F009260AGGAGMATYKSPKKVPSVVVGEEPAKTTMRKANVSVANTRSQDYPPMKTSGIKIRGTGCATKGLMARGPMA
Ga0334986_0003763_7587_7757F093774GGAMQITKEFLESEIVKMEQQRNHAHEVAVASQAAIDVLQAMIARLELPEPEPENDDAI
Ga0334986_0003763_8490_8696F009203GGAMSENTDTVKNVLDVVAIFSTIGAFLNMLTPLFGLIGAIVGAMRIYEMATGKDFYTLFRRKKADDAKQE
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