NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0000690

Scaffold Ga0334986_0000690


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0000690 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29526
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (76.19%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003785Metagenome / Metatranscriptome468Y
F006062Metagenome382Y
F015721Metagenome252N
F030066Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0000690_12029_12220F003785GGAGMTTVQELEVTVTSHIDVCTVRYEAIHARLKRLESLLIKIGGAIILVLLGALGSMAIMLLDAAK
Ga0334986_0000690_5212_5541F030066AGGMGDEYTYSPTVKQEKPKPSHNLEHSLHSNLATWNELVRQSPLNRLRFYDAQLARGIEVNRERVAELVREAGPAAVLSDRDVIGLIRQLWGEKAVEKLKRANSPAKQVQG
Ga0334986_0000690_8138_8494F015721N/AMAKDFADRKEFADKGDVYASGKRIEVKHIKHDFQYEAWPFETAAICAKKSFDAADPRPDYYYIVNASLTVAALVDVRTTFPDWLVRKITDKERGYDYDVYAVAPEYLAWRYIDFEERL
Ga0334986_0000690_9156_9560F006062GGAMKRIFPANTPPEQIAHAVLRMVSGLPNKPLAVTVELWKKPRTNQQNAYLWGVVYPAIMEGGGEALGGFTRDDVHEWLLGECFGWQTLEGFGRKRMRPLKRSSVLNKQEFSDYLTFIDTKCAEFGIAIPEPYEPA
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