NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0296908

Scaffold Ga0334979_0296908


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0296908 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)919
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001326Metagenome / Metatranscriptome721Y
F005781Metagenome / Metatranscriptome390Y
F077210Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0296908_159_794F001326GGAGMATYTVTNKYLIDDFAVLQLLTPSEIAVGQSITVAGVDATFNGSNLVVRALPQYLFIGVDTEGDLLYDYQMPIADQVLYAKVANNVERTAASGTVSYDPVCTWVTAAQVATYLGINIPNPSDDYTLLTQSVSAGNQFAYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA
Ga0334979_0296908_3_137F077210N/AEFYEQVRGIMSVEVPATLGRTFSYYGYVSTFIADGDQVKSIAIA
Ga0334979_0296908_794_919F005781N/AMSYTDLFNEAIDDVTATLTAVSGLRIVNDPTKLAPNCVYLDA
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