NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0072804

Scaffold Ga0334979_0072804


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0072804 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2183
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009267Metagenome / Metatranscriptome320N
F011222Metagenome / Metatranscriptome293N
F023103Metagenome211N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0072804_1492_2181F023103GAGGMAKFKFESLKFEQIMRDYAEIREVTIPDAVMLNARLLCVELARRTQPFGNDDTSGKTRVKNDIGKIIKPPVQLLAMANKVENKKIGKRLKSLIMNQRYDVVETIFRNLGFLNKWTGLEFLDSKSAIKTHHQDARVKPTGRTKTRGSKLFISSGSELNTYITEIQKRVGISKGGWADCASQLKKVNKGGLLTGFPSWVKKATRSGSGSVQDLTSNIKSPKVTLTNNVPWVS
Ga0334979_0072804_440_883F011222N/AMPLAPRQKGAAFFKYMDANKKFFHTINLKAAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGENAKGQDASQVYRQMTKEGDELEAKDPENPLCYIRAALANRDVLVDIIRNTPRLIEVEHNGKRIAISENASDKTKQEMTRFLK
Ga0334979_0072804_883_1278F009267N/AMKKTQNTDLVKDDEILRIQAMEDGPKIVNGRILRPITALTISWMQRNEVFSGNMDLVWKSAAFAYLHSEPYSAIRSVVNDRGAFINAVDSWIENNMIHHLEISAMTDAMNAAFELYNASATESKAGSGSGN
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