NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0057727

Scaffold Ga0334979_0057727


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0057727 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2499
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001019Metagenome / Metatranscriptome804Y
F001781Metagenome / Metatranscriptome635Y
F002387Metagenome / Metatranscriptome565Y
F005504Metagenome / Metatranscriptome398Y
F007644Metagenome / Metatranscriptome347Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0057727_1008_1283F000263AGGMNNEDIGLPPHLQRLINYDIDGLNIMHGELKNLMLIWEKELDKAQAIEDESEEAMDSMERKYCEGFLDALTALYKLTYDLSFAIKEKGGQK
Ga0334979_0057727_1283_1513F001019GGAGGMSYEPSLEILEVNYGCSPGGVDTFEVYDRLDIDPIVNLPIFETESLTEAVLFCYNLGKDFIVRTLAEWEERELMNA
Ga0334979_0057727_1663_1983F001781N/AMENMMKPDDKDKLNECLKILDTTDLGLSMVWLWTWSTINNIFEDETYKQKVTIDQMWDNLCEAVQAGQGFSLEYGAEQHQDDVLEWMMNREYIVDTMFEEEEDEDE
Ga0334979_0057727_268_492F002387AGGAGGMASFLEDVNQMVIDAVYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDEFIQSEFNKFYNLTEIDEDYFEIL
Ga0334979_0057727_3_275F005504N/ALTLEYEEETGWGGELEIVRGEVKELLEYENRCYACQSFDTLSYCENDCGEFCLECSQGSWQNEVAMAECQTHSVVLANEKTYTQEEALNG
Ga0334979_0057727_818_1015F007644AGAAGGMATKTSRFLEYMKIHLISLNQDLDKHRPEDTLLVEYIEGQIEATKHLLSVATDIMNNSNERYINE
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