NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0034238

Scaffold Ga0334979_0034238


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0034238 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3364
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003583Metagenome / Metatranscriptome478Y
F003714Metagenome / Metatranscriptome472Y
F024551Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0034238_1211_1477F003714N/AMPNANHPYTETLTFAGRVIPLKRPMAEYAARRLQAILPQIAALNAAGKTQGDAAEALGTTVGTLRSWLDITGTTWVNLNRRGPYRRQK
Ga0334979_0034238_3143_3364F024551N/AMTIIRPDSLPRLWWLFPWSIARQLHRNCNALKALADKTDDENRLLRQEVTRLSHSREHWIAKHDRAYAVAMHNE
Ga0334979_0034238_522_848F003583N/AMAKAKQSLSGSGNLLLAVTLLTGFAGVSALSSAYIAGYVLDQLQLTDALVMIVTDGGKMRSDSADLERNMSTATLALKSVRDLGWALAVGCLGVGMAVFLRSRRQKAS
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