NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0019159

Scaffold Ga0334979_0019159


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0019159 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4639
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F002259Metagenome / Metatranscriptome577Y
F006697Metagenome / Metatranscriptome366Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0019159_2384_2938F002259N/AMGMSAQDKMLNVASRLGLTSLKDMQGTTRMVYDSIGTAASNFTFFKGAAQRAFPLTNVGANGNQFQVNEALLVEKIGFFIPNSDAGTSYAGLGTNSVKFDLVIGNKTVLKDVSCEFGGEQAFWNDGTVGSSVIDLEGVGILIPPQVEYYVIAKPFATGARTATSIRLGCYLFGTGALLNFNTTI
Ga0334979_0019159_2941_3480F006697N/AMANQVQKVAYVDSKLGVSLPGQQTTRVIYDSVNAVANQQFFEFFTNFAGKTEFQSNLTTNKLDSAESMVIKSIQIICASEGIDLAQHLNLNVFVGNQNVIKDFDPSFNASSRGLAFDRLHSGLNSAGNLEIRLLTEIVIPPQVNFKATLQFGGTTMNLNDDVTIVFKGYGRIFSAGNSF
Ga0334979_0019159_3492_3896F000710N/AMATNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIIFSSSTSAAPATLVNALQLRVTLTINNDVVIDDVVAHDLGASATSGITSGFPNFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI
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