NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0014403

Scaffold Ga0334979_0014403


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0014403 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5388
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002162Metagenome / Metatranscriptome588Y
F002357Metagenome / Metatranscriptome567Y
F009461Metagenome / Metatranscriptome317Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0014403_1488_1658F002162N/AMPNYDYICDGEGLLIVLDLPMDHKIPHCQVCNAPLRRVFTAVPTIFRGTGWAGKDG
Ga0334979_0014403_1834_2499F002357GGAGGMAFNLDDYEDVATLNKWFIANYPMGRSDISVISHDPEKGYILVQATLWRDAADPAPAVSNIAFGSRETYMANMKKWYVEDTASSSLGRAIIILKGSNKTATKDSMETVKADQSFKEKLESRQNMYGKAGSKSAQIETILRDSFAADKKEPEPVAWSVGDVVDQIGSSIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKECPPNWATLTGNGKWYFKGGE
Ga0334979_0014403_2776_2970F009461GGAMKINGITILWFMIATGLLAYAVNLWKTEIYNRGYWSGRATGWDMHRRMITIKQQSDEVFDYDKN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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