NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0011150

Scaffold Ga0334979_0011150


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0011150 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6161
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008996Metagenome324N
F062571Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0011150_1_768F062571N/AMSITVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLIAPTAPTLTQTGFADHSGFYSGYRLDFTQEYGNTPVVTGATTTVSGVMAFAGNLEQLELADWSLDTYFRFGNTFTLVRPLTTPTDFTVYHGGSNFLAINGTKYVAAGFDSWLVSARVNYKSVNYDFAVSPSLSGTTDYNIQRFACGPANLLGSIPALSGAVEGDSYTVRFVSNASSQSPPTTF
Ga0334979_0011150_2694_3428F008996AGGMKLLANIAYHHHPNRVENLTKVIEAIKSYPVQSEIFVDTNDPQAAQELAHLPVTFHAHTAMGHPWELTSKHRNRIAEVYQHFDWVAYFEDDMMLPKEGFVNFTAQFDSMFEDNLYPSFTRIETYPNVEGEFSPDITFNPTPNMWREWNGKTYASLPFYINYHAFWMFSTKRLAEVLRRNPQALQVIPNNGLYRESLASLPIWSLELKPMLEMTEQGELADHCKVYHLSNNYRDNSRNIKEIFKR
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