NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0007535

Scaffold Ga0334979_0007535


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0007535 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7580
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066572Metagenome126N
F083629Metagenome112N
F086810Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0007535_2917_3210F086810GAGMYLEHEGFTVGQTKTGFVAVDHDGIVIQATPYRTSAQVFHPTLKIYREEYALSLQEIYWFTEKLSLLTEWAKDPNAKEPGRVLSISRRPVPSRQRTA
Ga0334979_0007535_3305_3850F083629N/AMRHTNLPNHFYVEVDNQYLGPNMPSGTTPGMWHAIYARPGQYLSCHVILASGAHWSGLPLHALSTTDSFDPDFDDSSQPWGAMGNDIEAVQFKALEGLTVNAFRAEVSGIHTGIVIDWADGYSQYPAEHKPLSLIIADEGYFLLLPNNHFTVKDKHFVDTKKYVDQMKFYKRGDLVYWET
Ga0334979_0007535_953_1402F066572GAGMTTITWMDNRKLMDELWPKWRLEPVLSSILNEKWGQLHQDKLQSCIRQHRLVRDSKPDISAIHKAYCALIPQNLVGEREVEQTRNDLQRCTPISAKEFAEWDVWAEAMLKNVTTEELKQVHEFIGHVPESRRILAVAVEHVRKPSVRYA
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