NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0000758

Scaffold Ga0334979_0000758


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0000758 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24317
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003540Metagenome480Y
F003785Metagenome / Metatranscriptome468Y
F015721Metagenome252N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0000758_15169_15363F003785GAGGMTTLQELETTVTSHIDVCAVRYEAIHARLKRLEQLMLKVGGAIILILLGALGSMGMLLLEALQK
Ga0334979_0000758_15366_15617F003540N/AMQKIVDMLFPVLLAAVGWLLSEITSFNNRLIAIEGKMPALITPEGVPTDSPISAANRQKQKEELLDKIYDLQLRVKLIEERNK
Ga0334979_0000758_20259_20735F015721GAGMTLTPHSDFEARFKASRPAEIVVATYLLNIGHTVTLPKRRMAKDFADRAEFADRGDIYASGKRIEVKHIKHDFGYQAWPFETAAICAKKSFDAADPRPDYYYIVNASMTVAALVDVKTTFPDWRVQKIVDRERGYDYDVYAVTPEYLGWRYIDFEERL
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