NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0031954

Scaffold Ga0334996_0031954


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0031954 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3358
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015080Metagenome / Metatranscriptome257Y
F058096Metagenome / Metatranscriptome135Y
F082582Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0031954_2019_2348F058096N/AMNAQLSIDECKVMWVVGALQRLATLGLIGPDIPLKLTPEAVDDYLEIDNHRNILFESDFEIASIFTALAKDECDEEPNPDDIDAIVDLILEYKNNRTEIVKFALSHQTV
Ga0334996_0031954_3078_3317F015080N/AMFDLLKFEPHNIPNAIAARHKFENDWEISVVAGPGLYGRIDEETYEVGIFRPNGNLTEDVSGWNTKHEVSAMMWVLSQL
Ga0334996_0031954_423_623F082582N/AMTVSFSKDVMLGMLRKGQTGTQILNILDVIVPQDVVEMTREYVCDQLGIADCPENDDEIEAYLAAV
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