NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0031613

Scaffold Ga0334996_0031613


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0031613 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3379
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025012Metagenome / Metatranscriptome203Y
F042755Metagenome / Metatranscriptome157Y
F047475Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0031613_1_312F025012N/AEIATEKIRNKAVELFGPAGRPQQPTWGMVFEGIRSGEITLKEEKRDYTGPYLNPTDVVWPAMEAKVAELDAYRLTVTADKIRAMDRCMLDTDAQQALTEFQGI
Ga0334996_0031613_2026_2256F047475GAGMSTEIKECQYIGAEQKQYPFKMCGHTLFPGRSYCEEHLWTVYKKGTNVNGKRKLKEIEKELAELKRIEEIEEIINA
Ga0334996_0031613_2249_2449F042755AGGAGMLDTVAKLTLAIGLIILVAALGPWLVIWSLNTLFPTLAIEFTFWTWCAVIIMGVFFRANVTVKRRD
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