NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0009183

Scaffold Ga0334996_0009183


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0009183 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6597
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013294Metagenome / Metatranscriptome272N
F023327Metagenome / Metatranscriptome210N
F054451Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0009183_2586_2753F023327N/AMQIEFMCAVVEDYIYRMKGVQVRIDRRAVASDGRQMAMLMNAYQIANGDKEHSNL
Ga0334996_0009183_3490_4110F013294N/AMVHSLGNASVHRLGERYGTKILWYGMKKLLDKYINNHYHEVRAYTLYFLTKLGSKIEADTVINNSYLHVLTINEDADTEDQVKSYLLNTIKYQILWNTSLSHRDDRVTSMEYEPNDEADDEQDLQAKILEDKIYSTHKGMIEIYRSQISDNVHRIVFEAYIDKGYTTARGMAKYFGIPVTSAHYLITEIKQNLRNLQYRYETFSNN
Ga0334996_0009183_5724_5942F054451N/AMKAITKSVIMLSEIPQHLQQNEVLQGHKLHTYAEFHIDDSEQDELTLWLLSKYPTLKRKISFLIHIDKQQEQ
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