| Basic Information | |
|---|---|
| Taxon OID | 3300033994 Open in IMG/M |
| Scaffold ID | Ga0334996_0004226 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9811 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (67.86%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003750 | Metagenome / Metatranscriptome | 470 | Y |
| F011390 | Metagenome | 291 | Y |
| F018927 | Metagenome | 232 | Y |
| F027516 | Metagenome | 194 | Y |
| F033793 | Metagenome / Metatranscriptome | 176 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334996_0004226_1081_1335 | F018927 | AGG | MKKHIEITRHLTVDGTSTYYVVEKSKNSSSIIWNGTCKQAAYQVAYRNARKESTPLYDTLYKAEVDRNGVKHIIPIGNELLEVN |
| Ga0334996_0004226_5517_5837 | F003750 | GAGG | MNEEIIQRTMQVLLYSGGIIAFWQITKHMPKALYTLLECITVMTFTVLLLTPFSMIIEYVLGGNIDTTMMFVGGLASISLLSTMWMVMAQSSRELQGKKQYQYVVL |
| Ga0334996_0004226_7252_7473 | F027516 | GGAG | MTYSEYIAKCEVAKTVFQCGVTAALVVEVATPEQRLAWIAEDLKKLETELEQIDKTFDEQDEVGDPFVCLEVK |
| Ga0334996_0004226_7625_7924 | F011390 | GAG | MKDMEIKTTNYGVCKVRKHKYQTNGNLALSLVDETGQPVVYITTNIFPMGEDEFCANYFNMGATLWNDIVSSGLFVQTGEKVPSGYCEYPVCKLVKELA |
| Ga0334996_0004226_8465_8701 | F033793 | GAG | MILGQDPNSTRPIGTEKTLKEAKEYILSRSYNNDYCAIYVADNENPAGELVGRWIVKNKKLTSFEKKSKPIDYKKQIF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |