| Basic Information | |
|---|---|
| Taxon OID | 3300033992 Open in IMG/M |
| Scaffold ID | Ga0334992_0003221 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12200 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (23.08%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000957 | Metagenome / Metatranscriptome | 821 | Y |
| F001338 | Metagenome / Metatranscriptome | 719 | Y |
| F002038 | Metagenome / Metatranscriptome | 600 | Y |
| F003583 | Metagenome / Metatranscriptome | 478 | Y |
| F053888 | Metagenome | 140 | Y |
| F065732 | Metagenome / Metatranscriptome | 127 | Y |
| F098917 | Metagenome / Metatranscriptome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334992_0003221_1237_1671 | F001338 | N/A | MEPNNDRKPLKSIETAGTYKLKMIKPAFDKIRQWEDGTVSCRLFFLDDQGNCLSKSFSSKWGKPLAMLVGKFSGTYTQELRLDATPAEFMEYITPACGKTCLLGVEAEPSGEYNGKPQYKYKLTYPKGSQKPTVSEPLPDNPPF |
| Ga0334992_0003221_175_492 | F065732 | GGAGG | MNDDLSMDERIAWARRSGLTDERIAFLLACPKYTRTGRKDQPAYIKTDNPNHHLQKLGDCWWLRIRRRKTNIVHNLGKDLETARKNRDEMLAAYDSGKPIPHLDQ |
| Ga0334992_0003221_2485_2841 | F098917 | N/A | MTNREYLRNILNQLAGEVASLRPTPEDSVTLAGSDLMQLQIAINEAATELERLDVENIEEAYHIKPIYDRIKAVIAHERVLRNQLDRVALAADNAIDLCNLLSAHVEEHNPNDEDEAL |
| Ga0334992_0003221_2838_3077 | F002038 | AGGA | MADTPKGIEKIAATVPKQYALLLFLDGFPYVEFTARKHADFLTDLNAWKRKTYPSFSRSVVRFFTLAPSGELKELTFTK |
| Ga0334992_0003221_4960_5244 | F000957 | N/A | MSSFRHLDGMVGLLSEIFEINERILTGDICSAKSAIASSRMKKLLHHYHEALHEDGAVKVSLQAYAAAGGWVGIQYSYELDGFEVAGSQVPRRV |
| Ga0334992_0003221_7154_7411 | F053888 | N/A | MNQDPIDLITVGDRPLRLSRPVLPHAARRLAGVLPQLNALNTAGKSQADAAEALGVSVGAVRTWIALAGIPWSNLNRRGPYRRQK |
| Ga0334992_0003221_8194_8514 | F003583 | N/A | MAKPSASGSEANLTLAVLILTVVSGLTALSCALTSSFVLDQLHNSEALALIVVDGSSIKSDSQSLERNLSWATLALRSVRDLGWALAVGCLGVGVAVFLRSRRQKA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |