NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334989_0008018

Scaffold Ga0334989_0008018


Overview

Basic Information
Taxon OID3300033984 Open in IMG/M
Scaffold IDGa0334989_0008018 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5355
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000211Metagenome / Metatranscriptome1583Y
F019954Metagenome / Metatranscriptome226Y
F042169Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0334989_0008018_2169_2414F042169AGGMPLDAAIGRVFIPYLPGRPHGHQFWSKKSSCGVVKLLFKASVKKAQNEPSTQLIEATSCVERWNATIKAKESKDNFLAIKC
Ga0334989_0008018_4207_4371F000211N/AMSYIYKVFEHLKQFWMGIWQHTHTVTTTDVSPDLEAFTEILDNVSVEMIPLRYH
Ga0334989_0008018_4406_4570F000211N/AMSYIYKVFEHLKQLWMGIWRHIHTITTTDVSPDLEEFTEILDDVSVEMIPLRYH
Ga0334989_0008018_4811_4975F000211N/AMSYIYKVLEHPKQLWMEIWQHIHTITTTDVSSDLGEFSEILDDVSVEMIPLNYH
Ga0334989_0008018_5010_5117F019954N/AMSYIYKVFEHLKQFLMGIWQHTHTITTADVSPDLE
Ga0334989_0008018_5209_5355F000211N/AMSYIYKEFEHPKQLWMGIWQHIHTVTTTDVSPDFGEFSEILDDINVEMI
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