NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0002566

Scaffold Ga0314861_0002566


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0002566 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19018
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077901Metagenome / Metatranscriptome117Y
F084998Metagenome / Metatranscriptome111Y
F085937Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0002566_2226_2414F084998AGGMPKAAPKSKSAMDALVNSFSELVEDARERMTPEEFQQAEKEFDEIIDKAKARASRGGRRETA
Ga0314861_0002566_2371_2598F085937AGGAGMAGRWKPPKSERTDAEILRRKRELAEKLAFAVEYGTEEEFVAAVKKFKPQVEVEKEELKDWIMRFHGARREKRGL
Ga0314861_0002566_2614_3015F077901GGAMAYEVFKRTGARVETPTLAIAPDGRITINAAAVRIARDARIASVLLLWDWTDHRLAIKAAQKGDRNSYALSIAAASHSGSLRAKSFLGYIGWRARKRETISMDWNEKERMFEAILPLEHLESERWGVKRSGGD
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