NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0001539

Scaffold Ga0314861_0001539


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0001539 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29262
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (48.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019074Metagenome / Metatranscriptome231Y
F039917Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0001539_15013_15300F039917N/AMAQTNFHGGKMKRTLTIWITLVTLLLALAIPVLHTALAKPAPAEHPEYRDAVTELRNARKHLEKALDDGYGHRDRAMRAIDHAIQECDEAVRMLH
Ga0314861_0001539_3936_4460F019074N/AMRTEESEENPLRGRRFWWIIILLCGVLAATSLQYSSENQSAPKPASTKSAAKATAFPQIWKSGSTGKEYRVKIDGDRFTAEWSNIPPQAAKQGAYIRSECRRSGTRWIGTSRILLPCPLPDGKTKMCPMILRFEVDFISSERITGGAEILRDFDCGSCEVRRTGWGPFSWAPKP
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