NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0000184

Scaffold Ga0314861_0000184


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0000184 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)107264
Total Scaffold Genes118 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)84 (71.19%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031737Metagenome / Metatranscriptome181Y
F050848Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0000184_22153_22437F031737GAGGVAGIFLVALFLEAASHTTRDCTVGLYVFDICSWVWVREQLGLPASKALRAVFLELIGLTLTAGIYLTIRFVFPFWPTGTSSNMEGDESQNSGSL
Ga0314861_0000184_35069_35611F050848N/AMVGVFLLAEGIGGLEGDLMADGGKMDLEATLPISPAHAGALAARMLILEEDCREIERSLDGFHGILYEYAGEIPETTKQRMRAVLAEILDKVTSIRQDLGLPRRVVELDKLIESRLPHIWVTLHESKSHGLRGYGAVPEELKAYLDTRIGAILSLLTGLQEALRKAKTEGKPEEASKEAL
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