NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0000131

Scaffold Ga0314861_0000131


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0000131 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)128352
Total Scaffold Genes114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)78 (68.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000299Metagenome / Metatranscriptome1341Y
F003354Metagenome / Metatranscriptome492Y
F008209Metagenome / Metatranscriptome337Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0000131_105779_106303F000299GGAGMENRQNGNREIKLSDRYDTAHVQEVVRQAQEELNLLLHQRAEIMKRIGTVKQTIVGLANLFGDGVLNEELLELVDRKSNGRQPGFTKACRMILMEAGRALSARDICDYFQQHMPAMLARHKDPMASVTTVLNRLVDYGEAQAVALSNGRRAWRWVAESTTERVAGNAANLAPVA
Ga0314861_0000131_33393_33569F008209N/AMRLSPSNSVYKEKTTVKRMLLVLATAVLLLNTLAVPKVARADGGGTGGGCDGKSVCKP
Ga0314861_0000131_33631_34053F003354GGAMTLKSALQDVKETTLAAVSGLLGKLGYLASLRRAQGRYEHWGMEAMHGPDSAERALKTAHDEVVTGILRTPLESLEQDLEESSRGDGVEARAYVEGLRNHFEDLLPGERTDSPAASHLNSVLVALSSLKKNRGRATRSTS
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