NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0000033

Scaffold Ga0314861_0000033


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0000033 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)214195
Total Scaffold Genes183 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)136 (74.32%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029312Metagenome / Metatranscriptome188Y
F031737Metagenome / Metatranscriptome181Y
F078132Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0000033_119800_120117F031737GAGLPVPEKAPYLRTLTYVLRIVAGVALVALFLEAARRTTRDCTVGLFVYDICSWVWLREHLGLPASKLLRALFLELTGLTLTAGIYLTIRFVFPFWPHGANPKKEAR
Ga0314861_0000033_14079_14468F029312N/AMSKGVEMDARLSTIRNLLYILIALVLLSSLAGFYVATELARNSDELASLQVLLQREVFKTALTHAQELETQLDSLNQSAAGIDDKLKKAQDDLVARMQVELPKILDDYVKQRGSLVQQKMQQRGIPVPH
Ga0314861_0000033_55460_55648F078132N/AMLRELPPLLRRLKLPRSRSTKHLRNAAIEVLEALRAVLDETIEWLRKEGRSEAELKRIRVEG
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