NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0000023

Scaffold Ga0314861_0000023


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0000023 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)238882
Total Scaffold Genes212 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)148 (69.81%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001116Metagenome / Metatranscriptome773Y
F006209Metagenome / Metatranscriptome378Y
F022810Metagenome / Metatranscriptome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0000023_155943_156326F022810GAGGMKKENRMNKNIRKCFGTGVLSLVLLLAARVPALAKNARTIVLSQDAVVSGKTLPAGEYVVQWQAHSSQATVEFAHGHKVVLSAEGRFEDRGKKYDSTTVLYDSDSNGARIISEIRFAASSQVLVFSQ
Ga0314861_0000023_190496_190963F006209AGGAGGMDCKAIRDLVVDLRGAELSAEAREHLSKCVACGGFLHDARVVQAGFRALAEEAAPEASLGFASRLIRRLHEWEEKGVRQEFFEAVGRRFVYATLALTLALLLSLALPTSGPVRGVAGADFLGLQAESQSAQPDVIGGDIGDSHDWIPVRLPERNR
Ga0314861_0000023_94838_95140F001116GAGGMTFLTTRYKLERDLTPNDFRGLHSLSTVYGIRGLFPEGRFLEVDYDASRIDEAEVLALVRKAGIAVEPEKPIPEGSFDYAGEFKDFAWPTQGLSPANQKG
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Institute for Fundamental Biomedical Research
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