Scaffold Ga0334792_007002

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334792_007002

Scaffold Ga0334792_007002

Overview

Basic Information
Taxon OID	3300033888 Open in IMG/M
Scaffold ID	Ga0334792_007002 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4835
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3534	Long. (^o)	19.0473	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001485	Metagenome / Metatranscriptome	686	Y
F070326	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334792_007002_2126_2593	F070326	AGAAGG	MSFYGQVVKDFNNYPALVAKVAQLLAKGDFVCVLLGDGVAVATTWDDSDISAIAKKAHLDPKEDGSFGFLGWTAGTTVDNPVVVATLAVIAQGASVEPHSASTDEELHDWLVWANEYGTSFLHAMAEAAFLSDLKHYRLLRPVLRNLKKMHPENS
Ga0334792_007002_3531_3674	F001485	N/A	MQKKIFWMVFTVFGLLADVVLPFWWACAATIPILVAAWWVAYRSDWF

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