NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334854_015523

Scaffold Ga0334854_015523


Overview

Basic Information
Taxon OID3300033829 Open in IMG/M
Scaffold IDGa0334854_015523 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1844
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0472Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003631Metagenome / Metatranscriptome476Y
F004157Metagenome / Metatranscriptome450Y

Sequences

Protein IDFamilyRBSSequence
Ga0334854_015523_252_671F003631N/AMELLLNLAWVLMAVPAYWLWRRCAGARASHRVSALQCLLALGCVLVLLFPVISATDDLHAMRTEMEESSTSKRAVRQTGGDKQSAWVNRLQGPPALVAHIEWPPAPQAGQLEVPTLCLPTLARRCDLHAGRAPPHSLLG
Ga0334854_015523_835_1641F004157GGAMEGAGFVGAAERGRQDLEDFDLITTTTKFAGCILACLLVMGMSAGALEQAGTARPNASSAAAPPAQTKDDGLVIEPEELPVTYPHGPYEVRFHGRGNYVPVLRWRLQSGTLPPGIILEDNGELHGAAERAGEFQFVVSVKDGGQPQQAVQRGFTIKVVEAITLVWKVPAHVAGNRIEGSVEVSNTTADDMDLTFDVKAVAENGRATEIGYQRFPLKRGTIAMALPFGESLPHGAYVIYVNVNGEVAKRNAIYKEQMQTPAPLQVVVGP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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